Great episode of "I Contain Multitudes" on Symbioses in Hydrothermal Vents

Love this - featuring Colleen Cavanaugh - the person who got me into microbiology ...


 


 Note - I have been a scientific consultant to this project.

Tweets from Nancy Moran’s talk at #UCDavis on "Two sides of symbiosis" storified

I went to a talk yesterday by Nancy Moran at UC Davis.  Nancy is one of my science heroes.  I have worked on a few projects with her and am just a big fan of her body of work on symbioses.  I have written about her work her on this blog many times before including
Anyway - I live tweeted her talk and then tried to "Storify" those tweets but Storify was not working well.  Thankfully  Surya Saha made a storify which I then edited (with his permission).


Bad Ome-like word of the week: symbiome

Well I got pointed to this paper: Transgenerational Transmission of the Glossina pallidipes Hytrosavirus Depends on the Presence of a Functional Symbiome

And as many might guess - the word "symbiome" did not sit well with me.  Alas, they don't define it in the paper.  So I can't really quibble with their definition.  But I did find some other stuff out there that, well, at least helps see how other people are using the word:
I can't really tell from most of these if "symbiome" can be a useful term or not sometimes.  Certainly the iPhylo example above has potential.  But in general, the word seems awkward at best.  Now - as far as I can tell, nobody is using it in the context of "genomics" so this does not fit in with my "badomics" obsession.  But it still does not make me feel warm and fuzzy so I am going to give it a pseudo-award - the Bad Ome-like word award.


Convoluted title, cool paper in #PLoSGenetics on relative of insect mutualists causing a human infection

Saw this tweet a few minutes ago:

The title of the paper took me a reread or two to understand.  But once I got what they were trying to say I was intrigued.  And so I went to the paper:  PLOS Genetics: A Novel Human-Infection-Derived Bacterium Provides Insights into the Evolutionary Origins of Mutualistic Insect–Bacterial Symbioses.  And it is loaded with interesting tidbits.  First, the first section of the results details the history of the infection in a 71 year old male and his recovery and the isolation and characterization of a new bacterial strain.  Phylogenetic analysis revealed this was a close relative of the Sodalis endosymbionts of insects.


And then comparative genomics revealed a bit more detail about the history of this strain, it's relatives, and some of the insect endosymbionts.  And plus, it allowed the authors to make some jazzy figures such as


And this and other comparative analyses revealed some interesting findings.  As summarize by the authors
Our results indicate that ancestral relatives of strain HS have served as progenitors for the independent descent of Sodalis-allied endosymbionts found in several insect hosts. Comparative analyses indicate that the gene inventories of the insect endosymbionts were independently derived from a common ancestral template through a combination of irreversible degenerative changes. Our results provide compelling support for the notion that mutualists evolve from pathogenic progenitors. They also elucidate the role of degenerative evolutionary processes in shaping the gene inventories of symbiotic bacteria at a very early stage in these mutualistic associations.
The paper is definitely worth a look.