Category Archives: eukaryotic genome annotation
RefSeq Release 217
RefSeq release 217 is now available online and from the FTP site. You can access RefSeq data through NCBI Datasets. What’s included in this release? As of March 8, 2023, this full release incorporates genomic, transcript, and protein data, containing: 348,351,219 records 254,500,694 proteins 50,975,429 RNAs sequences from 130,837 organisms The release is provided in … Continue reading RefSeq Release 217
New annotations in RefSeq!
In December and January, the NCBI Eukaryotic Genome Annotation Pipeline released twenty-nine new annotations in RefSeq for the following organisms: Acinonyx jubatus (cheetah) Anopheles cruzii (mosquito) Anopheles moucheti (mosquito) Bicyclus anynana (squinting bush brown) Budorcas taxicolor (takin) Carassius gibelio (silver crucian carp) Citrus sinensis (sweet orange) Crassostrea angulata (Portugese oyster) Culex pipiens pallens (northern house mosquito) Drosophila gunungcola (fruit … Continue reading New annotations in RefSeq!
Announcing New Names for Eukaryotic Genome Annotations in RefSeq!
The RefSeq eukaryotic genome annotation pipeline (EGAP) is moving to a new annotation naming format that can be used to unambiguously reference both the genome assembly and the RefSeq annotation. This will improve clarity when reporting the data you use and make the data more FAIR (Findable, Accessible, Interoperable, and Reusable). The new naming convention applies … Continue reading Announcing New Names for Eukaryotic Genome Annotations in RefSeq!
RefSeq Release 216
RefSeq release 216 is now available online, from the FTP site, and through NCBI’s Entrez programming utilities, E-utilities. This full release incorporates genomic, transcript, and protein data available as of January 9, 2023, and contains 342,395,932 records, including 249,868,639 proteins, 49,869,497 RNAs, and sequences from 128,299 organisms. The release is provided in several directories as a complete … Continue reading RefSeq Release 216
NIH Comparative Genomics Resource project
The potential impact of emerging model organisms on human health Comparative genomics is a science that compares genomic data either within a species or across species to answer questions in biomedicine. Laboratory experiments can then investigate the functional impact of those genomics similarities and differences. The history of comparative genomics goes back to the mid-1990s, … Continue reading NIH Comparative Genomics Resource project
New RefSeq Annotations!
In October and November, the NCBI Eukaryotic Genome Annotation Pipeline released thirty-one new annotations in RefSeq for the following organisms: Acanthochromis polyacanthus (spiny chromis) Acomys russatus (golden spiny mouse) Andrographis paniculata (eudicot) Antechinus flavipes (yellow-footed antechinus) Apodemus sylvaticus (European woodmouse) Apus apus (common swift) Arachis duranensis (eudicot) Carassius gibelio (silver crucian carp) Ctenopharyngodon idella (grass carp) Cucumis melo (muskmelon) … Continue reading New RefSeq Annotations!
Join NCBI at PAG 30
San Diego, January 13-18, 2023 NCBI is looking forward to seeing you in person at the International Plant and Animal Genome Conference (PAG 30), January 13-18, 2023 in San Diego, California. We’re especially excited to share our recent efforts on the NIH Comparative Genomics Resource (CGR), a multi-year National Library of Medicine (NLM) project to … Continue reading Join NCBI at PAG 30
RefSeq Release 215
RefSeq release 215 is now available online, from the FTP site and through NCBI’s Entrez programming utilities, E-utilities. This full release incorporates genomic, transcript, and protein data available as of November 7, 2022, and contains 335,372,031 records, including 244,583,657 proteins and sequences from 125,116 organisms. The release is provided in several directories as a complete dataset and also … Continue reading RefSeq Release 215
New annotations in RefSeq!
In August and September, the NCBI Eukaryotic Genome Annotation Pipeline released thirty-eight new annotations in RefSeq for the following organisms: Adelges cooleyi (spruce gall adelgid) Aethina tumida (small hive beetle) Anopheles aquasalis (mosquito) Anopheles maculipalpis (mosquito) Anthonomus grandis grandis (boll weevil) Aphis gossypii (cotton aphid) Bactrocera neohumeralis (fly) Bombus affinis (bee) Bombus huntii (bee) Cataglyphis hispanica (ant) Cygnus atratus … Continue reading New annotations in RefSeq!
RefSeq release 214 is available!
RefSeq release 214 is now available online, from the FTP site, and through NCBI’s Entrez programming utilities, E-utilities. This full release incorporates genomic, transcript, and protein data available as of September 12, 2022, and contains 328,588,569 records, including 239,609,016 proteins, 47,387,931 RNAs, and sequences from 123,394 organisms. The release is provided in several directories as a complete … Continue reading RefSeq release 214 is available!