Now Available: RefSeq Release 223

Check out RefSeq release 223, now available online and from the FTP site. You can access RefSeq data through NCBI Datasets. What’s included in this release? As of March 4, 2024, this full release incorporates genomic, transcript, and protein data containing: 425,594,654 records 316,329,937 proteins 60,886,133 RNAs sequences from 147,591 organisms  The release is provided in several directories as … Continue reading Now Available: RefSeq Release 223

Gene Ontology (GO) Terms for NCBI RefSeq Eukaryotic Genomes

Are you interested in more functional information about protein-coding genes? We’ve expanded NCBI RefSeq’s Eukaryote Genome Annotation Pipeline (EGAP) to include Gene Ontology (GO) terms computed for most protein-coding genes. We are using the latest version of InterProScan, which now includes analysis based on PANTHER reference trees, on all NCBI RefSeq eukaryotic genomes. That means having … Continue reading Gene Ontology (GO) Terms for NCBI RefSeq Eukaryotic Genomes

RefSeq Release 221

RefSeq release 221 is now available online and from the FTP site. You can access RefSeq data through NCBI Datasets. What’s included in this release? As of November 6, 2023, this full release incorporates genomic, transcript, and protein data containing: 404,657,610 records 300,054,945 proteins 57,882,313 RNAs sequences from 143,819 organisms  The release is provided in several directories as a … Continue reading RefSeq Release 221

New Annotations in RefSeq!

In July, August, and September, the NCBI Eukaryotic Genome Annotation Pipeline released fifty-six new annotations in RefSeq! New Annotations Achroia grisella (moth) Acipenser ruthenus (sterlet) Ahaetulla prasina (snake) Alligator mississippiensis (American alligator) Ammospiza caudacuta (bird) Ammospiza nelsoni (bird) Anopheles bellator (mosquito) Anopheles coustani (mosquito) Anopheles ziemanni (mosquito) Arachis stenosperma (eudicot) Carassius carassius (crucian carp) Centropristis striata (black seabass) … Continue reading New Annotations in RefSeq!

RefSeq Release 220

RefSeq release 220 is now available online and from the FTP site. You can access RefSeq data through NCBI Datasets. What’s included in this release? As of September 5, 2023, this full release incorporates genomic, transcript, and protein data containing: 391,350,361 records 289,333,423 proteins 56,423,426 RNAs sequences from 141,099 organisms  The release is provided in several directories as a … Continue reading RefSeq Release 220

New annotations in RefSeq!

In April, May, and June, the NCBI Eukaryotic Genome Annotation Pipeline released eighty-two new annotations in RefSeq for the following organisms: Acinonyx jubatus (cheetah) Actinidia eriantha (eudicot) Amaranthus tricolor (eudicot) Amphiprion ocellaris (clown anemonefish) Anastrepha obliqua (fly) Argiope bruennichi (spider) Balaenoptera acutorostrata (minke whale) Beta vulgaris subsp. vulgaris (beet) Betta splendens (Siamese fighting fish) Biomphalaria glabrata (bloodfluke planorb) Boleophthalmus … Continue reading New annotations in RefSeq!

Revolutionize your research with the NIH Comparative Genomics Resource (CGR)

Unlock the full potential of eukaryotic research organisms and their genomic data with the National Institutes of Health (NIH) Comparative Genomics Resource (CGR). CGR facilitates reliable comparative genomics analyses through community collaboration as well as an NCBI toolkit of interconnected, interoperable data and tools.    Comparative genomics is a field of study that uses the … Continue reading Revolutionize your research with the NIH Comparative Genomics Resource (CGR)

RefSeq Release 218

RefSeq release 218 is now available online and from the FTP site. You can access RefSeq data through NCBI Datasets. What’s included in this release? As of May 1, 2023, this full release incorporates genomic, transcript, and protein data containing: 356,619,635 records 260,776,371 proteins 52,503,423 RNAs sequences from 133,740 organisms The release is provided in several directories as a … Continue reading RefSeq Release 218

New annotations in RefSeq!

In February and March, the NCBI Eukaryotic Genome Annotation Pipeline released forty-two new annotations in RefSeq for the organisms listed below. Additionally, interim builds for over sixty species were run during that time period to fix some issues with gene symbol assignment. Agelaius phoeniceus (red-winged blackbird) Anastrepha ludens (Mexican fruit fly) Anopheles marshallii (mosquito) Anopheles nili (mosquito) Anoplopoma … Continue reading New annotations in RefSeq!

RefSeq Release 217

RefSeq release 217 is now available online and from the FTP site. You can access RefSeq data through NCBI Datasets. What’s included in this release? As of March 8, 2023, this full release incorporates genomic, transcript, and protein data, containing: 348,351,219 records 254,500,694 proteins 50,975,429 RNAs sequences from 130,837 organisms The release is provided in … Continue reading RefSeq Release 217