Category Archives: RNA-Seq
Search, Download, and Visualize Human RNA-Seq Gene Expression Data in NCBI’s Gene Expression Omnibus (GEO)
Are you interested in accessing consistently computed gene expression count matrices across thousands of experimental studies for half a million samples? Now you can! We are pleased to announce the availability of gene expression count matrices generated from all the human RNA-seq studies in GEO. Search You can find studies with RNA-seq counts by … Continue reading Search, Download, and Visualize Human RNA-Seq Gene Expression Data in NCBI’s Gene Expression Omnibus (GEO)
Posted by in Gene Expression Omnibus (GEO), RNA-Seq, What's New
NCBI on YouTube: Customize MSA Viewer, SciENcv, plants and RNA-Seq data, Datasets and PubMed
Missed a few videos on YouTube? Here’s the latest from our channel. Customize the MSA Viewer to Make Your Analysis Easier We’re constantly improving the Multiple Sequence Alignment (MSA) Viewer. This video demonstrates several new and popular features, including the ability to change data columns, hide selected rows, analyze polymorphisms, and more. An Update to … Continue reading NCBI on YouTube: Customize MSA Viewer, SciENcv, plants and RNA-Seq data, Datasets and PubMed
View GEO, SRA, or dbGaP data tracks in NCBI’s Genome Data Viewer
Did you know that you can see epigenomic or other experimental data in NCBI’s Genome Data Viewer (GDV)? You can easily add aligned study results from GEO, SRA, and dbGaP as data tracks to GDV browser view. Just go to the Tracks button on the toolbar and select the menu option to Configure Tracks. Navigate … Continue reading View GEO, SRA, or dbGaP data tracks in NCBI’s Genome Data Viewer
Aug 18 Webinar: Finding Data for your Research Organism: Plants and RNA-Seq data
Join us on August 18, 2021 at 12PM eastern time for the second webinar on finding data for your non-model research organism. In this webinar, you will learn how to use NCBI’s web resources to get data for a plant species, the black cottonwood. You will see how to find, access, and analyze gene and … Continue reading Aug 18 Webinar: Finding Data for your Research Organism: Plants and RNA-Seq data
Posted by in Datasets, Gene Expression, genome assemblies, RNA-Seq, Sequence Read Archive (SRA), SRA Toolkit, webinars, What's New
View intron feature evidence in the Genome Data Viewer and Sequence Viewer
Are you a researcher who works on gene biology and are interested in alternative splice patterns in your gene or genes of interest? If so, be sure to explore the intron feature evidence available in graphics views of genome assemblies annotated by NCBI. You can view the NCBI evidence used for calling splice variant for … Continue reading View intron feature evidence in the Genome Data Viewer and Sequence Viewer