Category Archives: prokaryotic genome annotation
Updated Bacterial and Archaeal Reference Genome Collection is Available!
Now Available! Updated Bacterial and Archaeal Reference Genomes Collection
New Release! Updated Bacterial and Archaeal Reference Genomes Collection Now Available
Updated bacterial and archaeal reference genomes collection now available!
Now available: Updated prokaryote representative genomes collection
NCBI hidden Markov models (HMM) release 10.0 now available!
ASM Microbe 2022 was a success!
NCBI had the pleasure of attending and participating in this year’s American Society of Microbiology (ASM) Microbe conference, June 9-13 in Washington, D.C. NCBI staff participated in activities and events throughout the three-day conference. Over 4,500 attendees gathered in the exhibit hall and joined a variety of poster presentations and talks! Reflections from a few … Continue reading ASM Microbe 2022 was a success!
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Announcing an updated prokaryotic representative genomes collection with 706 new species!
An updated bacterial and archaeal representative genomes collection is available! A total of 16,105 assemblies among the 249,000 prokaryotic assemblies in RefSeq were selected to represent their respective species. The collection has grown by 3.7% since January 2022. A total of 706 species are represented for the first time. In addition, 186 species are represented … Continue reading Announcing an updated prokaryotic representative genomes collection with 706 new species!
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Average Nucleotide Identity (ANI) for assembly validation
Validating genome assemblies submitted to GenBank using ANI based workflow Average Nucleotide Identity (ANI) analysis is a useful tool to verify taxonomic identities in prokaryotic genomes. As part of the NCBI bacterial genome submission process, GenBank performs ANI analyses to compare submitted prokaryotic genome assemblies against reference data generated from type strains. You can learn … Continue reading Average Nucleotide Identity (ANI) for assembly validation
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Posted by Genbank, genome assemblies, prokaryotic genome annotation, What's New
inNCBI hidden Markov models (HMM) release 8.0 now available!
Release 8.0 of the NCBI Hidden Markov models (HMM), used by the Prokaryotic Genome Annotation Pipeline (PGAP), is now available for download. You can search this collection against your favorite prokaryotic proteins to identify their function using the HMMER sequence analysis package. The 8.0 release contains 15,358 models, including 160 that are new since 7.0. … Continue reading NCBI hidden Markov models (HMM) release 8.0 now available!
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