The importance of test verification in public health laboratories

Laboratorian performs testing in a public health laboratory

by Gynene Sullivan, manager, Communications, APHL

With the changes to regulations regarding the development and dissemination of laboratory tests, there have been a myriad of companies who have begun marketing COVID-19 tests to public and private laboratories. While it is important to provide testing wherever and whenever necessary during the pandemic, it is also critical that approved tests are verified by the laboratory that intends to use them. This step is important in assuring that the test and the results are accurate and reliable.

Tests are Performed to a Universal Standard
Because public health laboratory facilities and equipment vary across the country, having standard guidelines to follow when performing a test ensures that the testing process is good, the data to be shared is on par with other laboratories and the laboratorian performing the test has the correct educational qualifications and is competent at performing the test. The most common standard followed by public health laboratories is the Clinical Laboratory Improvement Amendments of 1988 (CLIA). The US Food and Drug Administration (FDA) also regulates the release of tests, and there are many levels of FDA approvals. Even though securing these approvals takes time, it ensures that highly-complex testing, such as molecular diagnostics, or laboratory-developed tests are produced and used across all laboratories.

When the FDA issues an Emergency Use Authorization (EUA), it allows FDA to help strengthen the nation’s public health protections against threats by facilitating the availability and use of medical countermeasures needed during public health emergencies. In the case of COVID-19, manufacturers submit a “Letter of Intent” to FDA to let them know that they will begin distributing testing kits and equipment, and that they have validation for said tests. During this public health emergency, it is necessary for manufacturers to provide their validation data within 15 days of filing their Letter of Intent, so that the appropriate officials can review that data to ensure that tests were performed correctly and under the conditions specified by the testing instructions.

Tests Need Interpretation
Laboratory testing is a multi-step process, one that begins with sample collection and ends with reportable results. Laboratory scientists have the education and training to determine whether a test is being affected by variables such as device performance and sensitivity, whether a test needs to be performed again due to a false positive and if the integrity of a sample has been compromised. A test that is administered at home or at point-of-care may be highly variable. For example, a negative result may be due to of timing of sample collection, since it takes 3-7 days before an individual infected with SARS-CoV-2 produces sufficient antibodies for detection. Another situation is if a person is infected with a different strain of coronavirus, the test may produce a false positive for COVID-19 and, without a trained laboratorian to interpret the result, unnecessary treatment or quarantining may result.

The post The importance of test verification in public health laboratories appeared first on APHL Lab Blog.

MERS-CoV: Why We Are Not Panicking

By Tyler Wolford, Specialist, Laboratory Response NetworkPublic Health Preparedness and Response Program; and Stephanie Chester, Senior Specialist, Influenza Program, Infectious Disease Program, APHL

MERS-CoV: Why We Are Not Panicking | www.aphlblog.orgBy now you have probably heard that CDC has confirmed two cases of Middle East Respiratory Syndrome (MERS-CoV) infection in the US. Both were imported from Saudi Arabia; travelers became sick on their journey and sought care here in the US. This is the kind of stuff that typically gets us, infectious disease and preparedness folks, amped up, reaching for coffee and telling our loved ones we might be working late. We know that MERS-CoV is a serious infection – as of mid-May 2014, there have been 536 laboratory-confirmed cases and 145 deaths of MERS-CoV. However, the laboratory community is accustomed to responding to these situations—and that’s good news for public health. We have written, tested and rewritten preparedness plans, policies and procedures for dealing with novel and/or unexpected events and pathogens. We have dealt with white powders (more times than we can count), influenza A(H3N2)v, re-emerging vaccine preventable diseases and many other threats. In addition, we were given a lengthy (roughly two-year) heads-up with MERS-CoV. And while we know not to expect this luxury every time (we’re looking at you, 2009 H1N1 pandemic), the lead time meant that CDC, public health laboratories, health departments and clinicians were alerted and prepared well before the first US two cases occurred. Efforts by CDC and the public health labs ensured that, when the first cases arrived, they could be rapidly identified so proper precautions and epidemiologic investigations could begin. What are the reasons for our relative calmness despite the arrival of MERS-CoV on our shores? We were – and still are – prepared as the case count mounted on the other side of the Atlantic. Here are the specifics:

  • Planning. MERS-CoV was first reported in 2012 in Saudi Arabia. Once transmission became sustained in the Middle East, public health officials knew it was likely that a case would arrive in the US: we just didn’t know when. We had time to plan our response.
  • An approved test. CDC rapidly developed a real-time reverse transcriptase polymerase chain reaction (rRT-PCR) test which was granted emergency use authorization (EUA) by the FDA on June 5, 2013, and deployed the same month to 44 state public health laboratories and one local public health laboratory.
  • Infrastructure. The Laboratory Response Network (LRN) provided critical infrastructure for rapid distribution of the MERS-CoV test to public health laboratories across the US.
  • Training. Once laboratories received the test, they trained their staff and completed proficiency testing to demonstrate that they were trained and ready to perform testing should the need arise.
  • Experience. With health departments and physicians on alert, over 150 patients with MERS associated symptoms have been tested using the CDC assay. All were found to be negative.  This testing provided valuable opportunities for laboratories to familiarize themselves with the test.
  • Communication. CDC, APHL and other partner organizations have maintained timely communications with states, and others partners to keep everyone abreast of the current situation.
  • Dedication. Our public health labs are full of amazing scientists who are willing to spend countless hours, seven days a week to ensure rapid test results.

So if we aren’t panicking now that we have MERS-CoV cases in the US, what are we doing? We’re sprinting to keep pace with MERS-CoV and so far we have performed well, managing every step in the process with precision.

  • Indiana promptly notified CDC of a presumptive positive MERS-CoV infection and CDC rapidly confirmed this result.
  • CDC and Indiana started epidemiologic investigations and tested samples from close contacts of the infected patient.
  • APHL and CDC began communications immediately after the first case was confirmed.
  • APHL, in collaboration with CDC, held a laboratory alert call on May 6, 2014, to provide state and local public health labs with a situational update and to review laboratory testing guidance.
  • Currently CDC is distributing new proficiency testing panels so labs can refresh their competency on the CDC MERS-CoV test.

MERS-CoV is a serious threat that deserves the highest level of preparedness and attention.  Fortunately for the American public, we in the public health system are poised to handle MERS-CoV and other health threats whenever, wherever and however they enter our country. This is why we aren’t panicking, but it’s also why public health requires steady support.  Pathogens have no regard for budgets, funding cycles or economic trends. They won’t wait, and neither can we.