The 2018 Nucleic Acids Research database issue features several papers from NCBI staff that cover the status and future of databases including CCDS, ClinVar, GenBank and RefSeq. These papers are also available on PubMed. To read an article, click on … Continue reading
Posted by bankit, BLAST, ClinVar, Consensus Coding Sequence (CCDS), data science, Entrez, Genbank, Gene, Genome Data Viewer, Human Genome, Identical Protein Groups, Magic-BLAST, NCBI, OSIRIS, prokaryotic genome annotation, pubchem, QuickBLASTP, RefSeq, Variation, Viruses, What's New
ClinVar, NCBI’s database of clinically relevant genetic variations with supporting evidence, has redesigned its variation display, and welcomes your feedback. The new Variation in ClinVar (VCV) pages provide a better-organized, more-intuitive web display that makes it easy to quickly find … Continue reading
Starting in March 2018, SNP variation features will no longer be in RefSeq genome assembly records – chromosome and contig records with NC_, NT_, NW_ and AC_ accession prefixes. This change affects both the ASN.1 and flatfile records. Because the … Continue reading
NCBI dbSNP is pleased to announce a newly designed Reference SNP (RefSNP, rs) Report webpage to provide enhanced performance and presentation for access to individual RefSNP records. This Alpha version of the report enables browsing of submitted and computed RefSNP … Continue reading
ClinVar, NCBI’s archive of submitted associations between alleles in the human genome and diseases or phenotypes, is now producing XML files that aggregate all submitted disease/phenotype information by variant (or set of variants) for public release via FTP bulk download. … Continue reading
NCBI’s Virus Variation resource makes it easy to find genome and protein sequences for a number of viruses – no more stumbling through multiple synonyms to find what you need. Now you can search using standardized biological criteria and intuitive … Continue reading
This blog post is directed toward people who use dbSNP and dbVar, particularly those who submit non-human data to the two databases. dbSNP and dbVar archive, process, display and report information related to germline and somatic variations from multiple species. … Continue reading
This blog post is intended for geneticists and dataflow engineers who need to compare genetic variants. Have you ever tried to determine if two genetic variants are the same? If so, you’re not alone. There are competing ways to represent … Continue reading
One of the prominent ways to think about culture is as a system of symbols or beliefs. For example, Clifford Geertz wrote in 1973: Believing, with Max Weber, that man is an animal suspended in webs of significance he himself … Continue reading
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By Steven Folmar, Associate Professor and Associate Chair of Anthropology, Wake Forest University On September 15 of this year, I learned from my Program Officer at the National Science Foundation (NSF) that the House of Representatives Committee on Science, Space … Continue reading
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