Category Archives: Consensus Coding Sequence (CCDS)
RefSeq Release 215
RefSeq release 215 is now available online, from the FTP site and through NCBI’s Entrez programming utilities, E-utilities. This full release incorporates genomic, transcript, and protein data available as of November 7, 2022, and contains 335,372,031 records, including 244,583,657 proteins and sequences from 125,116 organisms. The release is provided in several directories as a complete dataset and also … Continue reading RefSeq Release 215
CCDS Release 24
An updated dataset of human protein-coding regions from the Consensus Coding Sequence (CCDS) collaboration Are you interested in a set of high-quality human coding regions (CDS) with equivalent annotation in NCBI’s RefSeq and EMBL-EBI’s (European Molecular Biology Laboratories-European Bioinformatics Institute) Ensembl annotations? Check out the new CCDS Release 24! This CCDS set was generated by … Continue reading CCDS Release 24
CCDS Release 23 for Mouse Now in Entrez Gene
Are you interested in high quality genomic annotations for human and mouse? Check out the Consensus Coding Sequence (CCDS) project! Release 23 of the CCDS project is now available in Entrez Gene. This release compares NCBI’s Mus musculus annotation release 108 … Continue reading
Posted by in Consensus Coding Sequence (CCDS), Gene, genome annotation, mouse genome, What's New
CCDS release 22 for human is public in Gene
The Consensus Coding Sequence (CCDS) update that compares NCBI’s Homo sapiens annotation release 109 to Ensembl’s release 92 is now reflected in Gene. This update adds 894 new CCDS IDs, and adds 154 Genes into the human CCDS set. CCDS … Continue reading
Posted by in Consensus Coding Sequence (CCDS), Gene, What's New
5 NCBI articles in 2018 Nucleic Acids Research database issue
The 2018 Nucleic Acids Research database issue features several papers from NCBI staff that cover the status and future of databases including CCDS, ClinVar, GenBank and RefSeq. These papers are also available on PubMed. To read an article, click on … Continue reading