Nature Publishing Group continues to deceive about #OpenAccess to genome papers

I was reminded today about the wonderful history of Nature in it's claim that it would make all papers reporting a new genome sequence freely and openly available. I wrote about how this was, well, not the truth, in 2012: The Tree of Life: Hey Nature Publishing Group - When are you going to live up to your promises about "free" genome papers? #opengate #aaaaaarrgh. And today I decided to recheck this.

So I searched for "Genome sequence" on the Nature site

And, well, I found a doozy of an example of a paper that is supposed to be openly available but is not. Initial sequencing and analysis of the human genome



That's right.  The "public" human genome paper is not freely or openly available.  It is $4.99 to rent or $20 to purchase.  Is this Nature's way of saying "We think the Lander et al. paper did not actually report on a genome?" and that the Venter paper truly won the race?  I don't think so.  I think this is a way of Nature saying "How can we make money off of our past papers? Which one gets a lot of looks? What? It is freely available? Change that." or something like that.

Want to bet they will say this is a mistake?  Want to bet they will not refund anybody's money who paid for this?

Here is a simple solution for everyone out there.  Do not trust Nature Publishing Group to make something available even if they say they will.


UPDATE 9/25 1 PM

But wait - there is more.  The Plasmodium genome paper, which I wrote about in 2012 not being available and which Nature promised to fix is again behind a pay wall










And more



UPDATE 10/16/17

Nature has apologized and said they fixed the issue and will refund any money people spent to buy these articles



Charting bird egg shapes, and why so many varieties

Bird eggs come in all shapes and sizes, and people didn’t really know why. After analyzing a number of variables, researchers think they found their answer.

After crunching the numbers, the scientists found the links they’d been looking for: the length of an egg correlates with bird body size. The shape of an egg—how asymmetrical or elliptical it is—relates to flying habits. And the stronger a bird’s flight, the more asymmetrical or elliptical its eggs will be.

Lots of charts and probably more information about bird eggs than you ever thought you wanted to know.

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Immersive digital waves to visualize nature

FLOW is an interactive art installation by Maotik that represents real-time weather data in the form of digital tides and waves that fill a room.

I used 11 parameters to define the ocean form, we connect ourselves to a database and retrieve data such as sea levels, tide coefficient, humidity, weather cast, wind force, wind direction, weather cast, moon cycle, location, time of the day. When parameters such as wind force or sea levels will affect the movement of the sea others such as weather cast or humidity will change the colors.

How do I install this in my garage?

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Visual collection of bird sounds

Different species of birds make different sounds. However, the sounds are so quick and compressed that it can be tough to pick out what is what. So Kyle McDonald, Manny Tan, and Yotam Mann created a “fingerprint” for each bird song and used machine learning to classify. Through the visual browser, you can play sounds and search for bird types. Similar sounds are closer to each other.

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Long-exposure bird flights

Bird flight

Using a long-exposure photography technique, Xavi Bou captured bird flight patterns in his series Ornitographies.

Unlike other motion analysis which preceded it, Ornitographies moves away from the scientific approach of chronophotography used by photographers like Eadweard Muybridge and Etienne-Jules Marey.

The approach used by Xavi Bou to portray the scene is not invasive; moreover, it rejects the distant study, resulting in organic form images that stimulate the imagination.

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Social network of Earth’s plants and animals

Plants and animals interact with each other to stay alive, which in turn forms complex systems. I think the Lion King covers the system simplistically in song-form at the beginning of the movie, but that doesn't cut it when trying to predict the effects of things like climate. Jianxi Gao, Baruch Barzel, and Albert-László Barabási study the complexities of nature's network in greater detail.

Mauro Martino helps explain the work in this video for Nature. [Thanks, Mauro]

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Day 1 of the #ChallengeOnNaturePhotography


OK - so after being nominated to join the fray by Gail Patricelli I am going to do the #ChallengeOnNaturePhotography. ...
Posted by Jonathan Eisen on Saturday, December 19, 2015

Way more trees than previously thought, new estimates show

https://www.youtube.com/watch?v=jqdOkXQngw8

There are a lot of trees on this planet. But how many trees there actually are is still kind of fuzzy, because the estimates are based on satellite imagery. It's hard to gauge density. Research by T. W. Crowther et al., recently published in Nature, used on-the-ground sampling to estimate more accurately.

The global extent and distribution of forest trees is central to our understanding of the terrestrial biosphere. We provide the first spatially continuous map of forest tree density at a global scale. This map reveals that the global number of trees is approximately 3.04 trillion, an order of magnitude higher than the previous estimate. Of these trees, approximately 1.39 trillion exist in tropical and subtropical forests, with 0.74 trillion in boreal regions and 0.61 trillion in temperate regions.

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Flamingos standing and feeding in a pool near salt beds,…



Flamingos standing and feeding in a pool near salt beds, Netherlands Antilles. Photograph by Volkmar K. Wentzel, National Geographic Creative

A rainbow arches over Victoria Falls in Zimbabwe. Photograph by…



A rainbow arches over Victoria Falls in Zimbabwe. Photograph by Volkmar Wentzel, National Geographic Creative